Ignition Set-up

Base Ignition Settings
Trigger Offset = 0
Skip Pulses = 3
Predictor Algorithm = Alpha-Beta-Gamma
Alpha % = 90
Beta % = 80
Gamma % = 10
Time Mask = 0
Percentage mask = 50
Cranking % = 50
After-Start % = 70
Normal Running % = 25
Check Tach Sync Options = Check Always
Ignition Input Capture = Rising Edge
Cranking Trigger = Trigger Rise
Coil Charging Scheme = Standard Coil Charge
Spark output = Going High Inverted

Dwell Settings
Maximum Dwell Duration = 3.1
Maximum Spark Duration = 2.0
Acceleration Compensation = 0.6
Volt 1 = -4
Volt 2 = -2
Volt 3 = 0
Volt 4 = 2
Volt 5 = 4
Duration 1 = 2.4
Duration 2 = 0.9
Duration 3 = 0.0
Duration 4 = -0.5
Duration 5 = -0.9

Advanced Ignition Options
Trigger Wheel Teeth = 0
Dual Spark Options = No dual spark
Offset = 0.0
Start IAT retard = 800
Full IAT retard = 1500
FET Output = 0
VR Input = 0

That should get you started. Now you need to make a spark table and a VE table. You can start tuning using this http://www.megamanual.com/ms2/tune.htm

Good Luck!